Troubleshooting HPLC Peak Retention Variation

What is Peak Retention Variation?
Before we can troubleshoot an issue, it's essential to understand the basics. In the inaugural installment of our series, we will embark on a journey into the heart of chromatography to demystify Peak Retention Variation. What factors contribute to the shifting retention times of analytes during an HPLC run? How do temperature, mobile phase composition, and column characteristics influence this phenomenon? We'll explore the theoretical underpinnings, examining the role each variable plays in shaping the chromatographic landscape.

Troubleshooting HPLC Peak Retention Variation
Focusing on troubleshooting strategies to tackle Peak Retention Variation head-on. From systematic diagnosis of the issue to targeted adjustments of critical parameters, we'll guide you through a step-by-step process to restore chromatographic precision.


We unravel the enigma of Peak Retention Variation and empower analysts with the knowledge to optimize their HPLC methods. As we navigate through the theoretical foundations and hands-on troubleshooting techniques, our aim is to equip you with the tools needed to conquer the challenges of chromatographic separations and elevate your analytical prowess.



Troubleshooting HPLC Peak Retention Variation

Possible Cause

Prevention/Solution

Decreasing Retention Times

Loss of bonded stationary phase

Replace column

Operate at pH 2-8 for silica based RP columns

Active groups on stationary phase

Use organic modifier in mobile phase

Increase buffer strength

Increasing flow rate

Check and adjust pump flow rate

Column overloaded

Reduce amount of sample injected

Use column with larger internal diameter

Increasing Retention Times

Changing mobile phase composition

Cover solvent reservoirs

Prepare fresh mobile phase

Loss of bonded stationary phase

Replace column

Decreasing flow rate

Check and adjust pump flow rate Check for leaks in system, including pump seals

Bubbles in mobile phase

Check flow rate and pressure

Degas mobile phase

Fluctuating Retention Times

Insufficient column equilibration

Equilibrate column longer between runs

Condition the column with concentrated sample

Change in mobile phase composition

Check the make-up of mobile phase and make up new if necessary

Check proportioning-valve accuracy

Insufficient buffer capacity

Use buffer concentrations >20mM

Fluctuating column temperature

Stabilize ambient temperature

Thermostat the column


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